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add packages and links to algorithms doc#3

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AmberLee2427 wants to merge 11 commits intoMovingUniverseLab:mainfrom
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Open

add packages and links to algorithms doc#3
AmberLee2427 wants to merge 11 commits intoMovingUniverseLab:mainfrom
AmberLee2427:main

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Copilot AI review requested due to automatic review settings March 1, 2026 15:58
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Pull request overview

Updates the repository’s microlensing code comparison docs by expanding the model-fitting algorithms table and adding (or intending to add) package links for easier navigation across supported tools.

Changes:

  • Expanded the model-fitting algorithms overview table to include additional packages/approaches.
  • Added GitHub/Documentation links under “Package Specific Notes” (with some sections currently commented out).
  • Added a docs link for VBMicrolensing in the master “List of codes”.

Reviewed changes

Copilot reviewed 2 out of 3 changed files in this pull request and generated 5 comments.

File Description
Model_Fitting_Algorithms.md Expands the fitting-algorithms comparison table and adds per-package GitHub/Docs links/sections.
Model_Class_Support.md Reformats the “Definitions” block for cleaner Markdown rendering.
List_of_codes.md Adds the missing VBMicrolensing documentation link in the codes table.

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Comment on lines +7 to +8
| Algorithm | BAGLE | VBM | MM | pyLIMA | RTModel | eesunhong | microlux | microJax |
|--------------------------------------------------------|-------|-----|----|--------|---------|-----------|----------|----------|
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The overview table uses microJax as the column name, but other docs in this repo use microjax (lowercase) and the GitHub repo is microjax. Please standardize the name/capitalization to avoid confusion and broken search matches.

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Comment on lines +62 to +74
<!--
### `microlux`

**GitHub Link:** [https://github.com/CoastEgo/microlux](https://github.com/CoastEgo/microlux)
**Documentation Link:** [https://coastego.github.io/microlux/](https://coastego.github.io/microlux/)



### `microJAX`

**GitHub Link:** [https://github.com/ShotaMiyazaki94/microjax](https://github.com/ShotaMiyazaki94/microjax)
**Documentation Link:** [https://shotamiyazaki94.github.io/microjax/](https://shotamiyazaki94.github.io/microjax/)
-->
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The microlux / microJAX package notes are inside an HTML comment block, so the GitHub/Docs links won’t render. If the intent is to include these links on the page, remove the <!-- ... --> wrapper (or replace with a clear TODO note outside of an HTML comment).

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Comment on lines +42 to 43
### pyLIMA

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Section headings use inconsistent formatting (e.g., ### BAGLE`` uses backticks, while ### pyLIMA does not). Please standardize heading formatting across packages so the document scans uniformly.

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Comment on lines +26 to +38
<!--
### `VBM`

**GitHub Link:** [https://github.com/valboz/VBMicrolensing](https://github.com/valboz/VBMicrolensing)
**Documentation Link:** [https://github.com/valboz/VBMicrolensing/tree/main/docs](https://github.com/valboz/VBMicrolensing/tree/main/docs)


<!-- ### MulensModel -->

### `MulensModel`

**GitHub Link:** [https://github.com/rpoleski/MulensModel](https://github.com/rpoleski/MulensModel)
**Documentation Link:** [https://rpoleski.github.io/MulensModel/](https://rpoleski.github.io/MulensModel/)
-->
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The VBM and MulensModel sections are wrapped in an HTML comment block, so their headings and links will not render in the published Markdown. If these sections are meant to be visible, remove the surrounding <!-- ... --> or narrow the comment to only the content you intend to hide.

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### essunhong
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Package name heading is spelled essunhong, but elsewhere in this repo (table header and links) it’s eesunhong. This inconsistency makes it harder to search/scan the doc; please standardize the spelling.

Suggested change
### essunhong
### eesunhong

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